Skylign

Interactive logos for alignments and profile HMMs

Skylign is a tool for creating logos representing both sequence alignments and profile hidden Markov models. Submit to the form on the right in order to produce (i) interactive logos for inclusion in webpages, or (ii) static logos for use in documents.

See an example

Create your logo

Upload an HMM or Multiple sequence alignment help

Alignment Processing Use Observed Counts help Use Weighted Counts help Create HMM - keep all columns help Create HMM - remove mostly-empty columns help

Fragment Handling Alignment sequences are full length help Some sequences are fragments help

Letter Height Information Content - All help Information Content - Above Background help Score help

Dynamic Logos

Configure your logo and scan through it.

Accepts Multiple Upload Types

Sequence alignments in various formats. HMM files from HMMER 2 or 3.

Export Options

Use the logo in your own site.

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